bioconductor-shortread¶
This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.
| Home | http://bioconductor.org/packages/release/bioc/html/ShortRead.html |
| Versions | 1.28.0 |
| License | Artistic-2.0 |
| Recipe | https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-shortread |
Installation¶
With an activated Bioconda channel (see Setup and usage), install with:
conda install bioconductor-shortread
and update with:
conda update bioconductor-shortread