.. _`bioconductor-shortread`:

bioconductor-shortread
======================

This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes.  The package also contains legacy support for early single-end, ungapped alignment formats.

======== ===========
Home     http://bioconductor.org/packages/release/bioc/html/ShortRead.html
Versions 1.28.0
License  Artistic-2.0
Recipe   https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-shortread
======== ===========

Installation
------------

.. highlight: bash

With an activated Bioconda channel (see :ref:`setup`), install with::

   conda install bioconductor-shortread

and update with::

   conda update bioconductor-shortread