bioconductor-fourcseq¶
FourCSeq is an R package dedicated to the analysis of (multiplexed) 4C sequencing data. The package provides a pipeline to detect specific interactions between DNA elements and identify differential interactions between conditions. The statistical analysis in R starts with individual bam files for each sample as inputs. To obtain these files, the package contains a python script (extdata/python/demultiplex.py) to demultiplex libraries and trim off primer sequences. With a standard alignment software the required bam files can be then be generated.
| Home | http://bioconductor.org/packages/release/bioc/html/FourCSeq.html |
| Versions | 1.4.0 |
| License | GPL (>= 3) |
| Recipe | https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-fourcseq |
Installation¶
With an activated Bioconda channel (see Setup and usage), install with:
conda install bioconductor-fourcseq
and update with:
conda update bioconductor-fourcseq