.. _`tophat`:

tophat
======

A spliced read mapper for RNA-Seq

======== ===========
Home     http://ccb.jhu.edu/software/tophat/index.shtml
Versions 2.1.0
License  Boost Software License
Recipe   https://github.com/bioconda/bioconda-recipes/tree/master/recipes/tophat2
======== ===========

Installation
------------

.. highlight: bash

With an activated Bioconda channel (see :ref:`setup`), install with::

   conda install tophat

and update with::

   conda update tophat