.. _`jellyfish`:

jellyfish
=========

Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence

======== ===========
Home     http://www.genome.umd.edu/jellyfish.html
Versions 2.2.3, 1.1.11
License  GPLv3
Recipe   https://github.com/bioconda/bioconda-recipes/tree/master/recipes/jellyfish
======== ===========

Installation
------------

.. highlight: bash

With an activated Bioconda channel (see :ref:`setup`), install with::

   conda install jellyfish

and update with::

   conda update jellyfish