.. _`hisat2`:

hisat2
======

graph-based alignment of next generation sequencing reads to a population of genomes

======== ===========
Home     https://ccb.jhu.edu/software/hisat2/index.shtml
Versions 2.0.1beta
License  GPLv3
Recipe   https://github.com/bioconda/bioconda-recipes/tree/master/recipes/hisat2
======== ===========

Installation
------------

.. highlight: bash

With an activated Bioconda channel (see :ref:`setup`), install with::

   conda install hisat2

and update with::

   conda update hisat2