.. _`cufflinks`:

cufflinks
=========

Transcriptome assembly and differential expression analysis for RNA-Seq.

======== ===========
Home     http://cole-trapnell-lab.github.io/cufflinks/
Versions 2.2.1
License  Boost Software License
Recipe   https://github.com/bioconda/bioconda-recipes/tree/master/recipes/cufflinks
======== ===========

Installation
------------

.. highlight: bash

With an activated Bioconda channel (see :ref:`setup`), install with::

   conda install cufflinks

and update with::

   conda update cufflinks